Download Table

Illumina array probe ID	DNAm gain or loss	Mean DNAm change (Δβ)	Mean case DNAm	Mean control DNAm	Gene symbol	Chromosome	Genomic coordinate hg19	UCSC Genome Browser	Strand	Relation to CpG island
cg00130223	Gain	0.184	0.812	0.628		chr16	33070551	ucsc	+	Island
cg00223593	Gain	0.212	0.503	0.292		chr12	34371784	ucsc	+	Island
cg00287096	Gain	0.231	0.670	0.439		chr7	63642710	ucsc	-	Island
cg00823843	Loss	-0.182	0.504	0.686		chr1	244094885	ucsc	+	Island
cg01059385	Gain	0.106	0.452	0.346	WBP2NL	chr22	42394854	ucsc	-	Island
cg01176433	Loss	-0.122	0.490	0.613		chr15	69754715	ucsc	-	OpenSea
cg01268383	Gain	0.190	0.962	0.772		chr16	33948886	ucsc	-	OpenSea
cg01271455	Loss	-0.119	0.302	0.421	PTPRN2	chr7	157362063	ucsc	-	S_Shore
cg01425746	Gain	0.128	0.896	0.768	CHST1	chr11	45671370	ucsc	-	Island
cg01667892	Gain	0.203	0.895	0.692	PRDM9	chr5	23507656	ucsc	+	OpenSea
cg02462353	Loss	-0.149	0.460	0.609	GP6	chr19	55549800	ucsc	-	OpenSea
cg03023574	Gain	0.190	0.723	0.533		chr16	34740586	ucsc	-	N_Shore
cg03070262	Gain	0.161	0.643	0.483		chr7	57484820	ucsc	-	Island
cg03122674	Gain	0.285	0.831	0.545	LOC650226	chr7	56515753	ucsc	-	Island
cg03124146	Gain	0.215	0.464	0.249		chr7	63361128	ucsc	-	Island
cg03203197	Gain	0.296	0.892	0.596		chr16	34587121	ucsc	-	Island
cg03313088	Gain	0.157	0.619	0.462		chr7	57472367	ucsc	+	Island
cg03340026	Loss	-0.134	0.386	0.520		chr19	1403530	ucsc	+	S_Shore
cg03415617	Gain	0.260	0.932	0.672		chr16	34726856	ucsc	+	OpenSea
cg03651292	Gain	0.235	0.700	0.466		chr18	14999804	ucsc	-	Island
cg03691338	Loss	-0.153	0.168	0.320		chr10	50344050	ucsc	+	S_Shelf
cg03701930	Gain	0.285	0.607	0.322		chr10	1981436	ucsc	+	OpenSea
cg04518195	Loss	-0.108	0.563	0.671	LRRC4B	chr19	51020534	ucsc	+	Island
cg04634427	Gain	0.185	0.852	0.668		chr15	27087315	ucsc	+	S_Shelf
cg04697265	Loss	-0.115	0.178	0.292		chr11	130683700	ucsc	+	OpenSea
cg04771100	Loss	-0.168	0.218	0.387	HTRA4	chr8	38832335	ucsc	+	Island
cg04880091	Gain	0.430	0.933	0.504		chr8	43132451	ucsc	+	Island
cg04983327	Gain	0.166	0.697	0.531		chr17	25289961	ucsc	+	Island
cg05374025	Loss	-0.221	0.302	0.523	GP6	chr19	55549746	ucsc	+	OpenSea
cg05374271	Loss	-0.254	0.403	0.656	RGS2	chr1	192778890	ucsc	+	S_Shore
cg05450667	Gain	0.201	0.496	0.295	C22orf27	chr22	31318103	ucsc	+	N_Shore
cg05453358	Gain	0.269	0.965	0.696		chr8	47529281	ucsc	-	Island
cg05780543	Gain	0.182	0.525	0.343	GPT2	chr16	46963765	ucsc	-	OpenSea
cg05809437	Gain	0.114	0.814	0.700	DLGAP2	chr8	1450032	ucsc	-	OpenSea
cg06098368	Gain	0.221	0.466	0.245		chr7	63386616	ucsc	+	Island
cg06508738	Gain	0.198	0.842	0.644	PRR23C	chr3	138763853	ucsc	-	Island
cg07011961	Gain	0.167	0.969	0.802	PRDM9	chr5	23507594	ucsc	+	OpenSea
cg07264025	Loss	-0.255	0.409	0.664	MGAT4C	chr12	86658860	ucsc	+	OpenSea
cg07286216	Gain	0.291	0.721	0.430	LOC650226	chr7	56515846	ucsc	+	Island
cg07485417	Loss	-0.139	0.463	0.602	NPM2	chr8	21882852	ucsc	-	Island
cg07581775	Gain	0.247	0.605	0.357		chr8	47829661	ucsc	-	OpenSea
cg08170227	Loss	-0.129	0.382	0.511	ACTN1	chr14	69422518	ucsc	-	OpenSea
cg08444117	Gain	0.142	0.948	0.806		chr7	57484154	ucsc	-	N_Shore
cg08499881	Loss	-0.133	0.323	0.457	AANAT	chr17	74454829	ucsc	+	OpenSea
cg08704196	Gain	0.228	0.856	0.628		chr16	34787393	ucsc	-	Island
cg08781728	Loss	-0.142	0.373	0.516	NPM2	chr8	21882587	ucsc	+	Island
cg08851727	Loss	-0.221	0.596	0.817	ICMT	chr1	6296770	ucsc	+	S_Shore
cg09234936	Gain	0.230	0.831	0.601		chr2	3751891	ucsc	-	Island
cg09303645	Loss	-0.165	0.303	0.469	TSPAN11	chr12	31138958	ucsc	+	OpenSea
cg09858108	Gain	0.261	0.689	0.428		chr8	58055024	ucsc	+	Island
cg10044101	Loss	-0.215	0.136	0.351	VNN2	chr6	133084290	ucsc	-	OpenSea
cg10285526	Gain	0.129	0.984	0.855		chr16	34787199	ucsc	+	Island
cg10517650	Loss	-0.226	0.241	0.467	CCDC52	chr3	113235015	ucsc	+	S_Shore
cg10678190	Gain	0.204	0.856	0.652		chr16	34442373	ucsc	+	Island
cg10743062	Gain	0.125	0.659	0.534	NCOA6	chr20	33413713	ucsc	+	S_Shore
cg10841756	Loss	-0.103	0.688	0.791	PVRL4	chr1	161059267	ucsc	+	OpenSea
cg11430197	Gain	0.197	0.527	0.330		chr8	43102008	ucsc	+	Island
cg11471802	Gain	0.241	0.971	0.730		chr8	47529015	ucsc	+	Island
cg11826726	Gain	0.309	0.703	0.393		chr8	43131432	ucsc	-	Island
cg11830096	Gain	0.117	0.928	0.811	PCDHGA1, PCDHGA10, PCDHGA11, PCDHGA12, PCDHGA2, PCDHGA3, PCDHGA4, PCDHGA5, PCDHGA6, PCDHGA7, PCDHGA8, PCDHGA9, PCDHGB1, PCDHGB2, PCDHGB3, PCDHGB4, PCDHGB5, PCDHGB6, PCDHGB7, PCDHGC3, PCDHGC4	chr5	140865433	ucsc	+	S_Shore
cg12182937	Loss	-0.138	0.444	0.582		chr6	33215649	ucsc	+	N_Shore
cg12479444	Gain	0.222	0.420	0.198		chr7	63361394	ucsc	+	Island
cg12519676	Loss	-0.179	0.493	0.672		chr4	174912211	ucsc	-	OpenSea
cg13136220	Loss	-0.103	0.666	0.769		chr8	48100957	ucsc	+	S_Shore
cg13266435	Gain	0.339	0.600	0.261	ANKRD30B	chr18	14748221	ucsc	-	Island
cg13551783	Loss	-0.129	0.436	0.565	CTRC	chr1	15773100	ucsc	-	OpenSea
cg13836098	Gain	0.209	0.745	0.536	HIST1H3E	chr6	26225269	ucsc	-	N_Shore
cg13939055	Loss	-0.189	0.488	0.677		chr1	244094870	ucsc	-	Island
cg14218447	Loss	-0.136	0.362	0.499		chr3	113418005	ucsc	-	S_Shelf
cg14258501	Loss	-0.160	0.402	0.562	LY6G6E	chr6	31680229	ucsc	-	OpenSea
cg14325153	Gain	0.290	0.880	0.591	PRR23C	chr3	138763900	ucsc	-	Island
cg14374799	Loss	-0.114	0.571	0.685	NPM2	chr8	21882942	ucsc	+	S_Shore
cg14497054	Gain	0.339	0.623	0.285		chr12	34261117	ucsc	-	Island
cg14909179	Loss	-0.202	0.578	0.780	CHID1	chr11	882687	ucsc	+	S_Shore
cg15046062	Loss	-0.125	0.188	0.314	HTRA4	chr8	38831857	ucsc	+	Island
cg15134787	Gain	0.164	0.967	0.803		chr7	57471760	ucsc	-	N_Shore
cg15509177	Gain	0.204	0.637	0.433	LOC100101938	chr13	19919209	ucsc	-	Island
cg15915602	Gain	0.252	0.932	0.680		chr2	114737460	ucsc	-	Island
cg15949805	Gain	0.190	0.567	0.377	ZNF727	chr7	63505714	ucsc	+	N_Shore
cg16107528	Gain	0.115	0.944	0.828	NTN1	chr17	8928451	ucsc	+	S_Shore
cg16482344	Gain	0.115	0.860	0.745	LOC84856	chr10	42970987	ucsc	+	N_Shore
cg16734913	Gain	0.164	0.851	0.687	OR5W2	chr11	55681277	ucsc	+	OpenSea
cg16771104	Loss	-0.130	0.446	0.575	HESX1	chr3	57233952	ucsc	+	OpenSea
cg17181653	Loss	-0.196	0.343	0.539	SF3B5	chr6	144417537	ucsc	+	S_Shore
cg17234513	Gain	0.128	0.839	0.711		chr15	27087554	ucsc	+	S_Shelf
cg17297634	Loss	-0.134	0.311	0.445	SCARA5	chr8	27806023	ucsc	-	OpenSea
cg17328716	Gain	0.192	0.608	0.417	LOC650226	chr7	56516244	ucsc	-	S_Shore
cg17336139	Gain	0.179	0.397	0.217	LOC648691, PRAME	chr22	22901649	ucsc	-	Island
cg17500055	Gain	0.153	0.497	0.344	GNG4	chr1	235805560	ucsc	+	Island
cg17566592	Loss	-0.102	0.100	0.202	SF3B5	chr6	144417472	ucsc	-	S_Shore
cg17861836	Loss	-0.168	0.221	0.389	C17orf56	chr17	79202505	ucsc	+	OpenSea
cg17886420	Loss	-0.182	0.412	0.594		chr10	1796743	ucsc	-	OpenSea
cg17913405	Gain	0.272	0.932	0.660		chr17	25290204	ucsc	+	Island
cg17918544	Gain	0.121	0.384	0.264		chr15	24123364	ucsc	-	Island
cg18029321	Gain	0.187	0.954	0.767	PCDHA1, PCDHA2, PCDHA3, PCDHA4, PCDHA5, PCDHA6, PCDHA7, PCDHA8, PCDHA9	chr5	140230327	ucsc	-	Island
cg18063332	Gain	0.125	0.548	0.423		chr8	2212228	ucsc	+	OpenSea
cg18355337	Loss	-0.315	0.382	0.697	GP6	chr19	55549722	ucsc	+	OpenSea
cg18557149	Gain	0.195	0.564	0.369	LOC650226	chr7	56515667	ucsc	-	Island
cg18792803	Loss	-0.115	0.329	0.444	COL4A1	chr13	110919641	ucsc	+	S_Shore
cg19313311	Loss	-0.124	0.450	0.574		chr7	74058031	ucsc	+	OpenSea
cg19457237	Gain	0.151	0.949	0.798		chr12	34500585	ucsc	+	Island
cg19743666	Loss	-0.205	0.362	0.567	YPEL5	chr2	30371484	ucsc	+	S_Shore
cg20067334	Gain	0.190	0.382	0.192		chr7	63387147	ucsc	+	S_Shore
cg20283107	Loss	-0.118	0.418	0.535	FAM91A1	chr8	124788969	ucsc	+	OpenSea
cg20597382	Gain	0.152	0.571	0.419		chr13	19448913	ucsc	-	Island
cg20613432	Loss	-0.114	0.524	0.638		chr1	2799580	ucsc	-	OpenSea
cg20893180	Loss	-0.143	0.498	0.640		chr8	36957380	ucsc	-	OpenSea
cg21113773	Gain	0.110	0.510	0.399		chr2	186603981	ucsc	+	S_Shore
cg21293934	Gain	0.407	0.716	0.309	ANKRD30B	chr18	14748231	ucsc	-	Island
cg21733531	Gain	0.225	0.576	0.351		chr7	63560712	ucsc	-	Island
cg21794419	Loss	-0.142	0.521	0.663	B3GNT5, MCF2L2	chr3	182973032	ucsc	+	S_Shore
cg21806580	Gain	0.199	0.535	0.335		chr5	18746011	ucsc	-	OpenSea
cg21877680	Gain	0.267	0.690	0.424		chr8	43132507	ucsc	+	S_Shore
cg22079902	Gain	0.156	0.909	0.753	PRDM9	chr5	23507644	ucsc	+	OpenSea
cg22189786	Gain	0.186	0.595	0.409	WBP2NL	chr22	42395068	ucsc	-	Island
cg22404498	Gain	0.228	0.736	0.508	RFPL2	chr22	32600723	ucsc	-	OpenSea
cg22452230	Loss	-0.106	0.493	0.599		chr15	69754698	ucsc	+	OpenSea
cg22695986	Gain	0.257	0.522	0.265		chr7	63386815	ucsc	+	Island
cg23067317	Loss	-0.134	0.623	0.757	GALNTL2	chr3	16216095	ucsc	-	OpenSea
cg23251746	Gain	0.149	0.647	0.498	CATSPERB	chr14	92047330	ucsc	-	OpenSea
cg23272978	Gain	0.117	0.893	0.775	LTBP3	chr11	65315031	ucsc	-	Island
cg23316599	Gain	0.271	0.698	0.427		chr7	57271380	ucsc	-	Island
cg23703062	Gain	0.276	0.521	0.245	ANKRD30B	chr18	14748198	ucsc	+	Island
cg23771956	Gain	0.108	0.974	0.866		chr10	45720041	ucsc	-	Island
cg23796967	Loss	-0.140	0.557	0.698	GP6	chr19	55549590	ucsc	+	OpenSea
cg23980776	Loss	-0.234	0.489	0.723	PDE6B	chr4	657075	ucsc	-	Island
cg24398379	Gain	0.190	0.641	0.450	LOC650226	chr7	56516077	ucsc	-	S_Shore
cg24530147	Gain	0.167	0.967	0.799	PRR23C	chr3	138763895	ucsc	-	Island
cg24576535	Loss	-0.147	0.252	0.398		chr3	113417998	ucsc	-	S_Shelf
cg24811352	Gain	0.113	0.582	0.469	PCDHB6	chr5	140529500	ucsc	-	N_Shore
cg24843609	Loss	-0.114	0.455	0.569	BGLAP	chr1	156211434	ucsc	+	N_Shelf
cg25125450	Gain	0.136	0.980	0.844	RFPL2	chr22	32601275	ucsc	-	OpenSea
cg25472530	Gain	0.259	0.894	0.635	PRDM9	chr5	23507617	ucsc	+	OpenSea
cg25625514	Loss	-0.111	0.481	0.592		chr11	76535564	ucsc	+	OpenSea
cg25818583	Loss	-0.208	0.530	0.738	GP6	chr19	55549802	ucsc	-	OpenSea
cg26092675	Gain	0.207	0.872	0.665	HIST1H3E	chr6	26225259	ucsc	-	N_Shore
cg26135325	Gain	0.186	0.561	0.375	LCE3A	chr1	152595323	ucsc	-	OpenSea
cg26153715	Gain	0.140	0.513	0.373		chr14	104808474	ucsc	+	OpenSea
cg26309511	Gain	0.278	0.564	0.286		chr7	48887641	ucsc	-	Island
cg26406176	Gain	0.158	0.481	0.323	LOC100101938	chr13	19919158	ucsc	+	Island
cg26434197	Gain	0.167	0.586	0.418	PRR23C	chr3	138763910	ucsc	+	Island
cg26733975	Gain	0.122	0.846	0.724		chr7	56551641	ucsc	-	Island
cg27206522	Gain	0.134	0.467	0.333	LCE3A	chr1	152595629	ucsc	+	OpenSea
cg27487796	Loss	-0.118	0.633	0.751		chr7	28973254	ucsc	-	OpenSea