Download Table

Illumina array probe ID	DNAm gain or loss	Mean DNAm change (Δβ)	Mean case DNAm	Mean control DNAm	Gene symbol	Chromosome	Genomic coordinate hg19	UCSC Genome Browser	Strand	Relation to CpG island
cg00130223	Loss	-0.225	0.403	0.628		chr16	33070551	ucsc	+	Island
cg00223593	Loss	-0.124	0.167	0.292		chr12	34371784	ucsc	+	Island
cg00287096	Loss	-0.169	0.270	0.439		chr7	63642710	ucsc	-	Island
cg00823843	Gain	0.188	0.874	0.686		chr1	244094885	ucsc	+	Island
cg01059385	Loss	-0.135	0.211	0.346	WBP2NL	chr22	42394854	ucsc	-	Island
cg01176433	Gain	0.136	0.748	0.613		chr15	69754715	ucsc	-	OpenSea
cg01268383	Loss	-0.279	0.493	0.772		chr16	33948886	ucsc	-	OpenSea
cg01271455	Gain	0.153	0.574	0.421	PTPRN2	chr7	157362063	ucsc	-	S_Shore
cg01425746	Loss	-0.103	0.665	0.768	CHST1	chr11	45671370	ucsc	-	Island
cg01667892	Loss	-0.228	0.464	0.692	PRDM9	chr5	23507656	ucsc	+	OpenSea
cg02462353	Gain	0.179	0.788	0.609	GP6	chr19	55549800	ucsc	-	OpenSea
cg03023574	Loss	-0.129	0.403	0.533		chr16	34740586	ucsc	-	N_Shore
cg03070262	Loss	-0.116	0.367	0.483		chr7	57484820	ucsc	-	Island
cg03122674	Loss	-0.222	0.323	0.545	LOC650226	chr7	56515753	ucsc	-	Island
cg03124146	Loss	-0.144	0.106	0.249		chr7	63361128	ucsc	-	Island
cg03203197	Loss	-0.174	0.423	0.596		chr16	34587121	ucsc	-	Island
cg03313088	Loss	-0.116	0.346	0.462		chr7	57472367	ucsc	+	Island
cg03340026	Gain	0.116	0.636	0.520		chr19	1403530	ucsc	+	S_Shore
cg03415617	Loss	-0.283	0.389	0.672		chr16	34726856	ucsc	+	OpenSea
cg03651292	Loss	-0.157	0.309	0.466		chr18	14999804	ucsc	-	Island
cg03691338	Gain	0.161	0.482	0.320		chr10	50344050	ucsc	+	S_Shelf
cg03701930	Loss	-0.158	0.163	0.322		chr10	1981436	ucsc	+	OpenSea
cg04518195	Gain	0.131	0.802	0.671	LRRC4B	chr19	51020534	ucsc	+	Island
cg04634427	Loss	-0.125	0.542	0.668		chr15	27087315	ucsc	+	S_Shelf
cg04697265	Gain	0.115	0.407	0.292		chr11	130683700	ucsc	+	OpenSea
cg04771100	Gain	0.190	0.576	0.387	HTRA4	chr8	38832335	ucsc	+	Island
cg04880091	Loss	-0.232	0.272	0.504		chr8	43132451	ucsc	+	Island
cg04983327	Loss	-0.160	0.371	0.531		chr17	25289961	ucsc	+	Island
cg05374025	Gain	0.207	0.730	0.523	GP6	chr19	55549746	ucsc	+	OpenSea
cg05374271	Gain	0.152	0.809	0.656	RGS2	chr1	192778890	ucsc	+	S_Shore
cg05450667	Loss	-0.107	0.187	0.295	C22orf27	chr22	31318103	ucsc	+	N_Shore
cg05453358	Loss	-0.442	0.254	0.696		chr8	47529281	ucsc	-	Island
cg05780543	Loss	-0.111	0.232	0.343	GPT2	chr16	46963765	ucsc	-	OpenSea
cg05809437	Loss	-0.141	0.559	0.700	DLGAP2	chr8	1450032	ucsc	-	OpenSea
cg06098368	Loss	-0.142	0.102	0.245		chr7	63386616	ucsc	+	Island
cg06508738	Loss	-0.140	0.505	0.644	PRR23C	chr3	138763853	ucsc	-	Island
cg07011961	Loss	-0.262	0.540	0.802	PRDM9	chr5	23507594	ucsc	+	OpenSea
cg07264025	Gain	0.107	0.771	0.664	MGAT4C	chr12	86658860	ucsc	+	OpenSea
cg07286216	Loss	-0.230	0.200	0.430	LOC650226	chr7	56515846	ucsc	+	Island
cg07485417	Gain	0.152	0.754	0.602	NPM2	chr8	21882852	ucsc	-	Island
cg07581775	Loss	-0.180	0.177	0.357		chr8	47829661	ucsc	-	OpenSea
cg08170227	Gain	0.172	0.683	0.511	ACTN1	chr14	69422518	ucsc	-	OpenSea
cg08444117	Loss	-0.245	0.561	0.806		chr7	57484154	ucsc	-	N_Shore
cg08499881	Gain	0.153	0.609	0.457	AANAT	chr17	74454829	ucsc	+	OpenSea
cg08704196	Loss	-0.143	0.485	0.628		chr16	34787393	ucsc	-	Island
cg08781728	Gain	0.156	0.672	0.516	NPM2	chr8	21882587	ucsc	+	Island
cg08851727	Gain	0.108	0.926	0.817	ICMT	chr1	6296770	ucsc	+	S_Shore
cg09234936	Loss	-0.135	0.467	0.601		chr2	3751891	ucsc	-	Island
cg09303645	Gain	0.172	0.641	0.469	TSPAN11	chr12	31138958	ucsc	+	OpenSea
cg09858108	Loss	-0.182	0.246	0.428		chr8	58055024	ucsc	+	Island
cg10044101	Gain	0.182	0.532	0.351	VNN2	chr6	133084290	ucsc	-	OpenSea
cg10285526	Loss	-0.188	0.667	0.855		chr16	34787199	ucsc	+	Island
cg10517650	Gain	0.256	0.722	0.467	CCDC52	chr3	113235015	ucsc	+	S_Shore
cg10678190	Loss	-0.168	0.484	0.652		chr16	34442373	ucsc	+	Island
cg10743062	Loss	-0.135	0.399	0.534	NCOA6	chr20	33413713	ucsc	+	S_Shore
cg10841756	Gain	0.134	0.925	0.791	PVRL4	chr1	161059267	ucsc	+	OpenSea
cg11430197	Loss	-0.140	0.190	0.330		chr8	43102008	ucsc	+	Island
cg11471802	Loss	-0.312	0.418	0.730		chr8	47529015	ucsc	+	Island
cg11826726	Loss	-0.132	0.262	0.393		chr8	43131432	ucsc	-	Island
cg11830096	Loss	-0.133	0.678	0.811	PCDHGA1, PCDHGA10, PCDHGA11, PCDHGA12, PCDHGA2, PCDHGA3, PCDHGA4, PCDHGA5, PCDHGA6, PCDHGA7, PCDHGA8, PCDHGA9, PCDHGB1, PCDHGB2, PCDHGB3, PCDHGB4, PCDHGB5, PCDHGB6, PCDHGB7, PCDHGC3, PCDHGC4	chr5	140865433	ucsc	+	S_Shore
cg12182937	Gain	0.171	0.753	0.582		chr6	33215649	ucsc	+	N_Shore
cg12479444	Loss	-0.108	0.089	0.198		chr7	63361394	ucsc	+	Island
cg12519676	Gain	0.107	0.779	0.672		chr4	174912211	ucsc	-	OpenSea
cg13136220	Gain	0.108	0.877	0.769		chr8	48100957	ucsc	+	S_Shore
cg13266435	Loss	-0.128	0.133	0.261	ANKRD30B	chr18	14748221	ucsc	-	Island
cg13551783	Gain	0.136	0.701	0.565	CTRC	chr1	15773100	ucsc	-	OpenSea
cg13836098	Loss	-0.120	0.416	0.536	HIST1H3E	chr6	26225269	ucsc	-	N_Shore
cg13939055	Gain	0.124	0.802	0.677		chr1	244094870	ucsc	-	Island
cg14218447	Gain	0.134	0.633	0.499		chr3	113418005	ucsc	-	S_Shelf
cg14258501	Gain	0.129	0.691	0.562	LY6G6E	chr6	31680229	ucsc	-	OpenSea
cg14325153	Loss	-0.250	0.340	0.591	PRR23C	chr3	138763900	ucsc	-	Island
cg14374799	Gain	0.163	0.847	0.685	NPM2	chr8	21882942	ucsc	+	S_Shore
cg14497054	Loss	-0.130	0.155	0.285		chr12	34261117	ucsc	-	Island
cg14909179	Gain	0.127	0.906	0.780	CHID1	chr11	882687	ucsc	+	S_Shore
cg15046062	Gain	0.143	0.457	0.314	HTRA4	chr8	38831857	ucsc	+	Island
cg15134787	Loss	-0.297	0.506	0.803		chr7	57471760	ucsc	-	N_Shore
cg15509177	Loss	-0.198	0.235	0.433	LOC100101938	chr13	19919209	ucsc	-	Island
cg15915602	Loss	-0.212	0.468	0.680		chr2	114737460	ucsc	-	Island
cg15949805	Loss	-0.127	0.250	0.377	ZNF727	chr7	63505714	ucsc	+	N_Shore
cg16107528	Loss	-0.132	0.696	0.828	NTN1	chr17	8928451	ucsc	+	S_Shore
cg16482344	Loss	-0.176	0.569	0.745	LOC84856	chr10	42970987	ucsc	+	N_Shore
cg16734913	Loss	-0.181	0.506	0.687	OR5W2	chr11	55681277	ucsc	+	OpenSea
cg16771104	Gain	0.104	0.680	0.575	HESX1	chr3	57233952	ucsc	+	OpenSea
cg17181653	Gain	0.127	0.666	0.539	SF3B5	chr6	144417537	ucsc	+	S_Shore
cg17234513	Loss	-0.149	0.562	0.711		chr15	27087554	ucsc	+	S_Shelf
cg17297634	Gain	0.111	0.556	0.445	SCARA5	chr8	27806023	ucsc	-	OpenSea
cg17328716	Loss	-0.142	0.275	0.417	LOC650226	chr7	56516244	ucsc	-	S_Shore
cg17336139	Loss	-0.110	0.107	0.217	LOC648691, PRAME	chr22	22901649	ucsc	-	Island
cg17500055	Loss	-0.132	0.212	0.344	GNG4	chr1	235805560	ucsc	+	Island
cg17566592	Gain	0.108	0.310	0.202	SF3B5	chr6	144417472	ucsc	-	S_Shore
cg17861836	Gain	0.155	0.544	0.389	C17orf56	chr17	79202505	ucsc	+	OpenSea
cg17886420	Gain	0.137	0.731	0.594		chr10	1796743	ucsc	-	OpenSea
cg17913405	Loss	-0.342	0.318	0.660		chr17	25290204	ucsc	+	Island
cg17918544	Loss	-0.104	0.160	0.264		chr15	24123364	ucsc	-	Island
cg18029321	Loss	-0.195	0.572	0.767	PCDHA1, PCDHA2, PCDHA3, PCDHA4, PCDHA5, PCDHA6, PCDHA7, PCDHA8, PCDHA9	chr5	140230327	ucsc	-	Island
cg18063332	Loss	-0.111	0.311	0.423		chr8	2212228	ucsc	+	OpenSea
cg18355337	Gain	0.232	0.929	0.697	GP6	chr19	55549722	ucsc	+	OpenSea
cg18557149	Loss	-0.152	0.217	0.369	LOC650226	chr7	56515667	ucsc	-	Island
cg18792803	Gain	0.102	0.547	0.444	COL4A1	chr13	110919641	ucsc	+	S_Shore
cg19313311	Gain	0.203	0.777	0.574		chr7	74058031	ucsc	+	OpenSea
cg19457237	Loss	-0.206	0.592	0.798		chr12	34500585	ucsc	+	Island
cg19743666	Gain	0.137	0.704	0.567	YPEL5	chr2	30371484	ucsc	+	S_Shore
cg20067334	Loss	-0.101	0.091	0.192		chr7	63387147	ucsc	+	S_Shore
cg20283107	Gain	0.109	0.645	0.535	FAM91A1	chr8	124788969	ucsc	+	OpenSea
cg20597382	Loss	-0.119	0.300	0.419		chr13	19448913	ucsc	-	Island
cg20613432	Gain	0.121	0.759	0.638		chr1	2799580	ucsc	-	OpenSea
cg20893180	Gain	0.136	0.776	0.640		chr8	36957380	ucsc	-	OpenSea
cg21113773	Loss	-0.101	0.298	0.399		chr2	186603981	ucsc	+	S_Shore
cg21293934	Loss	-0.185	0.124	0.309	ANKRD30B	chr18	14748231	ucsc	-	Island
cg21733531	Loss	-0.139	0.212	0.351		chr7	63560712	ucsc	-	Island
cg21794419	Gain	0.143	0.806	0.663	B3GNT5, MCF2L2	chr3	182973032	ucsc	+	S_Shore
cg21806580	Loss	-0.124	0.211	0.335		chr5	18746011	ucsc	-	OpenSea
cg21877680	Loss	-0.150	0.273	0.424		chr8	43132507	ucsc	+	S_Shore
cg22079902	Loss	-0.237	0.516	0.753	PRDM9	chr5	23507644	ucsc	+	OpenSea
cg22189786	Loss	-0.207	0.202	0.409	WBP2NL	chr22	42395068	ucsc	-	Island
cg22404498	Loss	-0.187	0.321	0.508	RFPL2	chr22	32600723	ucsc	-	OpenSea
cg22452230	Gain	0.129	0.728	0.599		chr15	69754698	ucsc	+	OpenSea
cg22695986	Loss	-0.153	0.112	0.265		chr7	63386815	ucsc	+	Island
cg23067317	Gain	0.107	0.863	0.757	GALNTL2	chr3	16216095	ucsc	-	OpenSea
cg23251746	Loss	-0.129	0.369	0.498	CATSPERB	chr14	92047330	ucsc	-	OpenSea
cg23272978	Loss	-0.146	0.630	0.775	LTBP3	chr11	65315031	ucsc	-	Island
cg23316599	Loss	-0.203	0.224	0.427		chr7	57271380	ucsc	-	Island
cg23703062	Loss	-0.126	0.119	0.245	ANKRD30B	chr18	14748198	ucsc	+	Island
cg23771956	Loss	-0.152	0.714	0.866		chr10	45720041	ucsc	-	Island
cg23796967	Gain	0.103	0.801	0.698	GP6	chr19	55549590	ucsc	+	OpenSea
cg23980776	Gain	0.133	0.856	0.723	PDE6B	chr4	657075	ucsc	-	Island
cg24398379	Loss	-0.167	0.284	0.450	LOC650226	chr7	56516077	ucsc	-	S_Shore
cg24530147	Loss	-0.236	0.563	0.799	PRR23C	chr3	138763895	ucsc	-	Island
cg24576535	Gain	0.167	0.565	0.398		chr3	113417998	ucsc	-	S_Shelf
cg24811352	Loss	-0.111	0.358	0.469	PCDHB6	chr5	140529500	ucsc	-	N_Shore
cg24843609	Gain	0.158	0.727	0.569	BGLAP	chr1	156211434	ucsc	+	N_Shelf
cg25125450	Loss	-0.245	0.599	0.844	RFPL2	chr22	32601275	ucsc	-	OpenSea
cg25472530	Loss	-0.199	0.436	0.635	PRDM9	chr5	23507617	ucsc	+	OpenSea
cg25625514	Gain	0.101	0.693	0.592		chr11	76535564	ucsc	+	OpenSea
cg25818583	Gain	0.174	0.912	0.738	GP6	chr19	55549802	ucsc	-	OpenSea
cg26092675	Loss	-0.158	0.507	0.665	HIST1H3E	chr6	26225259	ucsc	-	N_Shore
cg26135325	Loss	-0.158	0.217	0.375	LCE3A	chr1	152595323	ucsc	-	OpenSea
cg26153715	Loss	-0.119	0.254	0.373		chr14	104808474	ucsc	+	OpenSea
cg26309511	Loss	-0.121	0.164	0.286		chr7	48887641	ucsc	-	Island
cg26406176	Loss	-0.119	0.203	0.323	LOC100101938	chr13	19919158	ucsc	+	Island
cg26434197	Loss	-0.125	0.293	0.418	PRR23C	chr3	138763910	ucsc	+	Island
cg26733975	Loss	-0.181	0.542	0.724		chr7	56551641	ucsc	-	Island
cg27206522	Loss	-0.109	0.224	0.333	LCE3A	chr1	152595629	ucsc	+	OpenSea
cg27487796	Gain	0.121	0.872	0.751		chr7	28973254	ucsc	-	OpenSea