Download Table

Illumina array probe ID	DNAm gain or loss	Mean DNAm change (Δβ)	Mean case DNAm	Mean control DNAm	Gene symbol	Chromosome	Genomic coordinate hg19	UCSC Genome Browser	Strand	Relation to CpG island
cg00084338	Gain	0.313	0.863	0.550	DLL1	chr6	170595920	ucsc	+	N_Shore
cg00138041	Gain	0.198	0.734	0.535	PRDM8	chr4	81117666	ucsc	-	N_Shore
cg00230502	Gain	0.168	0.326	0.158	CCDC60	chr12	119772381	ucsc	+	Island
cg00270625	Gain	0.192	0.918	0.726	CHKB-CPT1B, CPT1B	chr22	51017020	ucsc	-	Island
cg00313914	Gain	0.152	0.652	0.501	NAV1	chr1	201618902	ucsc	-	Island
cg00445443	Loss	-0.194	0.185	0.379	HOXA2	chr7	27143479	ucsc	-	Island
cg00481259	Gain	0.221	0.501	0.280	DECR2	chr16	450838	ucsc	-	Island
cg00525277	Gain	0.175	0.591	0.416	TNXB	chr6	32064239	ucsc	+	Island
cg00573770	Gain	0.386	0.771	0.385	ZEB2	chr2	145278485	ucsc	+	N_Shelf
cg00602811	Gain	0.257	0.649	0.392	ZEB2	chr2	145278564	ucsc	+	N_Shelf
cg00660989	Gain	0.186	0.456	0.270	FAM179B, KLHL28	chr14	45432517	ucsc	-	S_Shore
cg00701946	Loss	-0.239	0.540	0.779	GPR75, LOC100302652	chr2	54087200	ucsc	+	Island
cg00994804	Gain	0.403	0.733	0.330	RUNX1	chr21	36259384	ucsc	-	Island
cg01287088	Gain	0.191	0.895	0.704	PFN3	chr5	176827392	ucsc	+	Island
cg01327147	Gain	0.213	0.880	0.667	KIAA1161	chr9	34371380	ucsc	+	Island
cg01337207	Gain	0.222	0.730	0.507	TNXB	chr6	32063835	ucsc	+	Island
cg01399317	Gain	0.196	0.712	0.516	FAM83H	chr8	144810340	ucsc	-	Island
cg01435643	Loss	-0.253	0.184	0.437	MCF2L	chr13	113689776	ucsc	+	S_Shore
cg01745539	Gain	0.184	0.388	0.204	HLA-DQB1	chr6	32632332	ucsc	-	Island
cg01746241	Gain	0.165	0.826	0.661	KIAA1161	chr9	34370836	ucsc	-	Island
cg01765653	Loss	-0.146	0.390	0.535	GABBR1	chr6	29599160	ucsc	+	N_Shore
cg01876338	Loss	-0.243	0.538	0.782	GPR75, LOC100302652	chr2	54087008	ucsc	+	Island
cg01899620	Loss	-0.131	0.343	0.475	MCF2L	chr13	113689422	ucsc	+	S_Shore
cg01992382	Gain	0.219	0.521	0.302	TNXB	chr6	32064212	ucsc	+	Island
cg02005600	Gain	0.149	0.735	0.586	HOXA5	chr7	27183687	ucsc	-	Island
cg02102533	Loss	-0.186	0.622	0.807	CCDC102A	chr16	57562841	ucsc	+	Island
cg02156899	Gain	0.189	0.790	0.601	NOXO1	chr16	2029256	ucsc	+	Island
cg02225599	Loss	-0.256	0.142	0.398	HOXA2	chr7	27143252	ucsc	+	Island
cg02248486	Gain	0.157	0.756	0.599	HOXA5	chr7	27183197	ucsc	-	Island
cg02439789	Gain	0.167	0.596	0.429	SAMD11	chr1	871442	ucsc	-	Island
cg02458885	Gain	0.189	0.392	0.203	PRDM8	chr4	81119250	ucsc	-	Island
cg02493211	Gain	0.204	0.546	0.342	BCL9L	chr11	118781634	ucsc	-	Island
cg02498063	Gain	0.165	0.574	0.409	CCDC60	chr12	119772577	ucsc	+	Island
cg02524475	Gain	0.154	0.541	0.387	HHIP	chr4	145566595	ucsc	+	Island
cg02548132	Loss	-0.177	0.763	0.940	ANGPT2, MCPH1	chr8	6420243	ucsc	-	N_Shelf
cg02676175	Gain	0.269	0.777	0.508	ACAP1, KCTD11	chr17	7253721	ucsc	-	Island
cg02691325	Gain	0.178	0.435	0.257	TMEM151B	chr6	44243682	ucsc	+	Island
cg02773588	Gain	0.137	0.930	0.793	CELSR3	chr3	48698519	ucsc	+	Island
cg02869559	Gain	0.413	0.773	0.360	RUNX1	chr21	36259067	ucsc	+	Island
cg02963119	Gain	0.181	0.556	0.376	DECR2	chr16	450971	ucsc	-	Island
cg02993069	Gain	0.199	0.293	0.094	C1orf113	chr1	36786777	ucsc	+	Island
cg03049249	Gain	0.161	0.673	0.512	CCDC144A	chr17	16593602	ucsc	-	Island
cg03127104	Loss	-0.163	0.413	0.577	GABBR1	chr6	29599250	ucsc	+	N_Shore
cg03223076	Gain	0.187	0.709	0.522	CELSR3	chr3	48698559	ucsc	-	Island
cg03335125	Loss	-0.186	0.723	0.908	CCDC17	chr1	46088542	ucsc	-	Island
cg03368099	Gain	0.159	0.664	0.505	HOXA5	chr7	27184522	ucsc	-	Island
cg03434624	Gain	0.171	0.301	0.130	VPS37B	chr12	123380884	ucsc	-	Island
cg03463411	Gain	0.228	0.553	0.325	PRDM8	chr4	81118188	ucsc	+	Island
cg03556669	Gain	0.163	0.352	0.189	TNXB	chr6	32064497	ucsc	+	Island
cg03780927	Gain	0.248	0.502	0.254	BCL9L	chr11	118781150	ucsc	+	Island
cg03803541	Loss	-0.158	0.368	0.526	HOXB6, LOC404266	chr17	46681401	ucsc	+	N_Shelf
cg04027736	Loss	-0.254	0.375	0.629	HOXA2	chr7	27143404	ucsc	-	Island
cg04142955	Gain	0.190	0.726	0.536	DOM3Z, STK19	chr6	31939182	ucsc	-	N_Shore
cg04149916	Gain	0.186	0.518	0.332	DOM3Z, STK19	chr6	31939320	ucsc	-	N_Shore
cg04179952	Gain	0.181	0.519	0.338	NAV1	chr1	201619296	ucsc	-	Island
cg04316233	Gain	0.136	0.827	0.691	CCDC144A	chr17	16593614	ucsc	-	Island
cg04599341	Gain	0.237	0.662	0.425	NOXO1	chr16	2029855	ucsc	+	Island
cg04863892	Gain	0.185	0.755	0.570	HOXA5	chr7	27183376	ucsc	-	Island
cg04873098	Loss	-0.246	0.436	0.683	PRDM16	chr1	3165191	ucsc	+	S_Shore
cg05004142	Loss	-0.231	0.458	0.689	CCDC102A	chr16	57562740	ucsc	+	Island
cg05076221	Gain	0.141	0.598	0.457	HOXA5	chr7	27182637	ucsc	+	Island
cg05156901	Gain	0.242	0.875	0.633	CHKB-CPT1B, CPT1B	chr22	51016647	ucsc	-	Island
cg05194618	Gain	0.159	0.297	0.137	FAM179B, KLHL28	chr14	45432310	ucsc	-	S_Shore
cg05204097	Loss	-0.311	0.544	0.855	LMF1	chr16	979553	ucsc	+	Island
cg05210804	Gain	0.170	0.506	0.336	TAPBP, ZBTB22	chr6	33282896	ucsc	+	Island
cg05251669	Loss	-0.155	0.107	0.263	LOC100130522	chr18	77905392	ucsc	-	Island
cg05337761	Gain	0.198	0.532	0.335	C1orf86, LOC100128003	chr1	2121350	ucsc	-	Island
cg05414908	Loss	-0.176	0.712	0.888	GPR75, LOC100302652	chr2	54087173	ucsc	+	Island
cg05448404	Gain	0.167	0.363	0.196	CPLX1	chr4	779174	ucsc	-	Island
cg05452645	Gain	0.184	0.653	0.468	PRDM8	chr4	81117648	ucsc	-	N_Shore
cg05542681	Gain	0.129	0.264	0.135	FBXL16	chr16	744329	ucsc	-	Island
cg05695937	Gain	0.136	0.321	0.186	NAV1	chr1	201618004	ucsc	-	Island
cg05713794	Loss	-0.165	0.657	0.822	GP5	chr3	194119862	ucsc	-	S_Shore
cg05724492	Loss	-0.341	0.609	0.950	LMF1	chr16	979663	ucsc	-	Island
cg05857996	Gain	0.165	0.951	0.786	EBF4	chr20	2675418	ucsc	+	S_Shore
cg06035600	Gain	0.208	0.723	0.515	MAP3K6	chr1	27687454	ucsc	+	Island
cg06092953	Loss	-0.153	0.112	0.265	LOC100130522	chr18	77905700	ucsc	-	S_Shore
cg06166490	Loss	-0.210	0.380	0.590	HOXA2	chr7	27143334	ucsc	+	Island
cg06373870	Gain	0.166	0.532	0.367	PRDM8	chr4	81117854	ucsc	-	N_Shore
cg06401979	Loss	-0.212	0.247	0.459	HOXA2	chr7	27143718	ucsc	-	S_Shore
cg06519422	Loss	-0.172	0.472	0.643	GABBR1	chr6	29599227	ucsc	-	N_Shore
cg06530441	Gain	0.263	0.639	0.376	CHKB-CPT1B, CPT1B	chr22	51016951	ucsc	-	Island
cg06634460	Gain	0.182	0.437	0.255	VPS37B	chr12	123380892	ucsc	-	Island
cg06687305	Loss	-0.164	0.542	0.706	CCDC17	chr1	46088487	ucsc	-	Island
cg06758350	Gain	0.346	0.709	0.363	RUNX1	chr21	36259460	ucsc	+	Island
cg06821199	Gain	0.158	0.433	0.276	CPLX1	chr4	779230	ucsc	+	Island
cg06847624	Gain	0.389	0.800	0.410	PFN3	chr5	176827672	ucsc	-	Island
cg06885459	Loss	-0.179	0.277	0.456	MCF2L	chr13	113689728	ucsc	+	S_Shore
cg07317062	Gain	0.166	0.520	0.354	HOXA4	chr7	27170389	ucsc	-	Island
cg07318204	Gain	0.158	0.901	0.742	HHIP	chr4	145566442	ucsc	-	Island
cg07338658	Loss	-0.322	0.612	0.934	LMF1	chr16	979488	ucsc	+	Island
cg07599786	Gain	0.149	0.708	0.559	NAV1	chr1	201618654	ucsc	+	Island
cg07895437	Gain	0.186	0.574	0.389	TAPBP, ZBTB22	chr6	33282972	ucsc	-	Island
cg07925670	Gain	0.214	0.603	0.389	ACAP1	chr17	7253489	ucsc	+	Island
cg07973095	Gain	0.257	0.440	0.183	DECR2	chr16	451041	ucsc	-	Island
cg08260245	Gain	0.206	0.880	0.674	CHKB-CPT1B, CPT1B	chr22	51016501	ucsc	+	Island
cg08476511	Gain	0.138	0.611	0.472	KIF25	chr6	168435924	ucsc	-	Island
cg08611810	Loss	-0.178	0.707	0.885	GPR75, LOC100302652	chr2	54087178	ucsc	+	Island
cg09014329	Gain	0.117	0.505	0.388	FAM171A2	chr17	42431749	ucsc	-	Island
cg09462576	Gain	0.172	0.676	0.504	MRPL55	chr1	228297873	ucsc	+	S_Shore
cg10146935	Gain	0.267	0.525	0.257	SAMD11	chr1	871309	ucsc	-	Island
cg10180404	Gain	0.217	0.523	0.307	HLA-DQB1	chr6	32632335	ucsc	-	Island
cg10319053	Loss	-0.209	0.241	0.450	HOXA2	chr7	27143371	ucsc	-	Island
cg10365886	Gain	0.247	0.839	0.592	TNXB	chr6	32063874	ucsc	+	Island
cg10403849	Loss	-0.149	0.255	0.404	TET1	chr10	70321960	ucsc	-	S_Shore
cg10490842	Gain	0.237	0.680	0.443	CHKB-CPT1B, CPT1B	chr22	51016605	ucsc	-	Island
cg10531725	Gain	0.163	0.451	0.288	SP6	chr17	45924889	ucsc	-	Island
cg10770023	Gain	0.266	0.805	0.540	CHKB-CPT1B, CPT1B	chr22	51016645	ucsc	-	Island
cg10848724	Gain	0.182	0.340	0.158	VPS37B	chr12	123380879	ucsc	-	Island
cg10890302	Gain	0.203	0.496	0.293	TNXB	chr6	32064246	ucsc	+	Island
cg10914467	Gain	0.168	0.575	0.406	DOM3Z, STK19	chr6	31939225	ucsc	-	N_Shore
cg10923662	Gain	0.225	0.414	0.190	TNXB	chr6	32064258	ucsc	+	Island
cg11410718	Gain	0.157	0.558	0.401	HOXA4	chr7	27170413	ucsc	-	Island
cg11669516	Gain	0.175	0.878	0.703	IGFBP2	chr2	217501093	ucsc	-	S_Shelf
cg11742103	Gain	0.181	0.430	0.249	EML3, MTA2	chr11	62369871	ucsc	-	Island
cg11953245	Gain	0.152	0.474	0.322	C1orf35	chr1	228291591	ucsc	+	S_Shore
cg11959399	Gain	0.214	0.607	0.393	C20orf54	chr20	741724	ucsc	-	Island
cg12061113	Loss	-0.202	0.155	0.357	LOC100130522	chr18	77905747	ucsc	+	S_Shore
cg12128839	Gain	0.207	0.703	0.496	HOXA5	chr7	27183437	ucsc	-	Island
cg12451530	Loss	-0.218	0.669	0.887	GPR75, LOC100302652	chr2	54087209	ucsc	+	Island
cg12477880	Gain	0.398	0.762	0.364	RUNX1	chr21	36259241	ucsc	+	Island
cg12679760	Gain	0.169	0.262	0.093	C1orf113	chr1	36786615	ucsc	+	Island
cg13069441	Gain	0.221	0.628	0.407	DOM3Z, STK19	chr6	31939323	ucsc	-	N_Shore
cg13185177	Loss	-0.181	0.292	0.472	GP5	chr3	194119886	ucsc	-	S_Shore
cg13287964	Loss	-0.189	0.190	0.380	LOC100130522	chr18	77905751	ucsc	+	S_Shore
cg13298116	Gain	0.241	0.552	0.311	EML3, MTA2	chr11	62369860	ucsc	-	Island
cg13400512	Gain	0.162	0.393	0.231	TNXB	chr6	32064578	ucsc	+	Island
cg13518079	Gain	0.314	0.614	0.300	EBF4	chr20	2675073	ucsc	-	S_Shore
cg13546858	Gain	0.150	0.583	0.433	SAMD11	chr1	869347	ucsc	-	Island
cg13577505	Gain	0.195	0.370	0.176	MAPK11	chr22	50706248	ucsc	+	Island
cg13692836	Gain	0.161	0.529	0.368	SAMD11	chr1	869369	ucsc	-	Island
cg13704680	Loss	-0.219	0.132	0.351	LOC100130522	chr18	77905299	ucsc	-	Island
cg13708645	Gain	0.195	0.618	0.423	KDM2B	chr12	121974306	ucsc	-	N_Shore
cg13735469	Gain	0.197	0.641	0.444	FAM83H	chr8	144810658	ucsc	-	Island
cg13985518	Loss	-0.206	0.488	0.694	HOXA2	chr7	27143788	ucsc	+	S_Shore
cg14188106	Gain	0.279	0.698	0.419	TNXB	chr6	32063895	ucsc	+	Island
cg14220678	Loss	-0.201	0.687	0.888	CCDC17	chr1	46089024	ucsc	+	Island
cg14825413	Gain	0.233	0.434	0.201	GLI4	chr8	144358566	ucsc	+	Island
cg14832904	Loss	-0.221	0.560	0.781	GPR75, LOC100302652	chr2	54087028	ucsc	+	Island
cg15196197	Gain	0.187	0.291	0.104	TNXB	chr6	32064573	ucsc	+	Island
cg15265085	Gain	0.244	0.482	0.238	TNXB	chr6	32064588	ucsc	+	Island
cg15720832	Gain	0.173	0.807	0.633	C1orf35	chr1	228291682	ucsc	+	S_Shore
cg15909132	Gain	0.207	0.610	0.403	FAM171A2	chr17	42431109	ucsc	+	Island
cg15951870	Gain	0.181	0.509	0.329	SP6	chr17	45925060	ucsc	+	Island
cg16054907	Gain	0.166	0.979	0.812	MAPK11	chr22	50706066	ucsc	-	Island
cg16672562	Gain	0.323	0.906	0.583	HIF3A	chr19	46801672	ucsc	+	S_Shore
cg16737533	Loss	-0.143	0.249	0.392	LOC100130522	chr18	77905355	ucsc	+	Island
cg16834823	Gain	0.208	0.554	0.346	TNXB	chr6	32064218	ucsc	+	Island
cg17179862	Loss	-0.170	0.360	0.530	HOXB6, LOC404266	chr17	46681362	ucsc	+	N_Shelf
cg17569124	Gain	0.186	0.662	0.476	HOXA5	chr7	27183644	ucsc	-	Island
cg17624802	Gain	0.141	0.389	0.249	FAM171A2	chr17	42431627	ucsc	+	Island
cg17662683	Gain	0.163	0.488	0.325	TNXB	chr6	32064146	ucsc	+	Island
cg17806418	Loss	-0.191	0.457	0.648	GABBR1	chr6	29599320	ucsc	-	N_Shore
cg17890940	Loss	-0.256	0.551	0.807	ELFN1	chr7	1782346	ucsc	+	N_Shore
cg18073471	Gain	0.175	0.372	0.196	PRDM8	chr4	81119198	ucsc	+	Island
cg19037007	Gain	0.160	0.552	0.392	C20orf54	chr20	741798	ucsc	+	Island
cg19112186	Gain	0.270	0.876	0.607	CHKB-CPT1B, CPT1B	chr22	51016639	ucsc	-	Island
cg19127638	Loss	-0.205	0.559	0.765	TET1	chr10	70322443	ucsc	-	S_Shore
cg19142026	Gain	0.262	0.601	0.339	HOXA4	chr7	27170395	ucsc	-	Island
cg19284039	Loss	-0.192	0.499	0.691	ASCL2	chr11	2292895	ucsc	+	Island
cg19409579	Gain	0.269	0.507	0.238	PRDM8	chr4	81118501	ucsc	-	Island
cg19432993	Loss	-0.204	0.359	0.563	HOXA2	chr7	27143287	ucsc	+	Island
cg19759481	Gain	0.184	0.741	0.556	HOXA5	chr7	27183402	ucsc	-	Island
cg19878627	Loss	-0.178	0.714	0.892	GPR75, LOC100302652	chr2	54087184	ucsc	+	Island
cg19961545	Loss	-0.237	0.620	0.857	GPR75, LOC100302652	chr2	54087067	ucsc	-	Island
cg20191338	Loss	-0.155	0.140	0.295	LOC100130522	chr18	77905663	ucsc	+	S_Shore
cg20366479	Gain	0.184	0.650	0.466	IGFBP2	chr2	217501126	ucsc	-	S_Shelf
cg20783319	Gain	0.138	0.339	0.201	NCAM1	chr11	112831681	ucsc	+	N_Shore
cg20995835	Gain	0.184	0.758	0.574	CCDC144B	chr17	18528589	ucsc	+	Island
cg20996351	Gain	0.172	0.270	0.098	MAP3K6	chr1	27687232	ucsc	+	Island
cg21096966	Gain	0.172	0.581	0.409	FAM179B, KLHL28	chr14	45432458	ucsc	+	S_Shore
cg21493951	Gain	0.210	0.591	0.381	HLA-DQB1	chr6	32632339	ucsc	-	Island
cg21644740	Loss	-0.189	0.440	0.629	GABBR1	chr6	29599248	ucsc	+	N_Shore
cg21727486	Gain	0.140	0.427	0.287	NCAM1	chr11	112831502	ucsc	-	N_Shore
cg22078805	Gain	0.132	0.506	0.374	FAM171A2	chr17	42432047	ucsc	-	Island
cg22163199	Gain	0.167	0.440	0.273	MRPL55	chr1	228297864	ucsc	+	S_Shore
cg22165106	Loss	-0.155	0.435	0.590	ELFN1	chr7	1782221	ucsc	-	N_Shore
cg22679406	Loss	-0.186	0.459	0.645	GABBR1	chr6	29599332	ucsc	-	N_Shore
cg22721579	Gain	0.248	0.686	0.438	FAM176B	chr1	36787933	ucsc	-	Island
cg22857963	Gain	0.255	0.463	0.208	GLI4	chr8	144358043	ucsc	+	Island
cg22891070	Gain	0.283	0.913	0.630	HIF3A	chr19	46801642	ucsc	+	S_Shore
cg24246628	Gain	0.179	0.537	0.358	KIF25	chr6	168435915	ucsc	-	Island
cg24363820	Gain	0.277	0.821	0.545	CHKB-CPT1B, CPT1B	chr22	51016704	ucsc	-	Island
cg24510518	Gain	0.194	0.444	0.250	GLI4	chr8	144358898	ucsc	+	Island
cg24652615	Gain	0.144	0.907	0.764	TMEM151B	chr6	44243305	ucsc	-	Island
cg24670715	Loss	-0.182	0.522	0.705	ANGPT2, MCPH1	chr8	6420507	ucsc	-	N_Shelf
cg24807850	Loss	-0.170	0.558	0.728	PRDM16	chr1	3165392	ucsc	-	S_Shore
cg24882324	Gain	0.157	0.271	0.114	TNXB	chr6	32064508	ucsc	+	Island
cg25307665	Gain	0.146	0.702	0.556	HOXA5	chr7	27183695	ucsc	-	Island
cg25468618	Gain	0.265	0.879	0.614	FAM83H	chr8	144810035	ucsc	-	Island
cg26051413	Loss	-0.185	0.332	0.518	ASCL2	chr11	2292902	ucsc	+	Island
cg26162794	Gain	0.147	0.891	0.744	CCDC144B	chr17	18528568	ucsc	+	Island
cg26227225	Gain	0.207	0.556	0.349	C1orf86, LOC100128003	chr1	2121040	ucsc	-	Island
cg26266427	Gain	0.193	0.748	0.555	TNXB	chr6	32063838	ucsc	+	Island
cg26299084	Gain	0.222	0.426	0.204	PRDM8	chr4	81118588	ucsc	+	Island
cg26365998	Gain	0.167	0.398	0.231	CCDC60	chr12	119772365	ucsc	-	Island
cg26811705	Gain	0.142	0.554	0.412	BCL9L	chr11	118781409	ucsc	-	Island
cg26995224	Gain	0.255	0.742	0.487	KDM2B	chr12	121974147	ucsc	-	N_Shore
cg27242132	Gain	0.238	0.425	0.187	PRDM8	chr4	81119179	ucsc	-	Island
cg27246129	Gain	0.272	0.786	0.514	DLL1	chr6	170595947	ucsc	+	N_Shore
cg27387193	Gain	0.202	0.663	0.461	TNXB	chr6	32064032	ucsc	+	Island
cg27436995	Gain	0.200	0.577	0.377	FBXL16	chr16	743999	ucsc	-	Island
cg27502912	Gain	0.175	0.781	0.606	CHKB-CPT1B, CPT1B	chr22	51017002	ucsc	-	Island