Download Table

Illumina array probe ID	DNAm gain or loss	Mean DNAm change (Δβ)	Mean case DNAm	Mean control DNAm	Gene symbol	Chromosome	Genomic coordinate hg19	UCSC Genome Browser	Strand	Relation to CpG island
cg00048370	Gain	0.109	0.729	0.620		chr6	164506940	ucsc	-	OpenSea
cg00106345	Loss	-0.195	0.249	0.444		chr7	27138396	ucsc	+	S_Shore
cg00428457	Loss	-0.111	0.661	0.772		chr2	119887681	ucsc	-	OpenSea
cg00511167	Loss	-0.106	0.504	0.610	CEP63	chr3	134206504	ucsc	-	S_Shore
cg00525681	Loss	-0.154	0.464	0.618	SLITRK5	chr13	88329152	ucsc	-	N_Shore
cg00828556	Loss	-0.135	0.439	0.574		chr3	196351987	ucsc	-	OpenSea
cg01370449	Gain	0.124	0.880	0.756	HOXA5	chr7	27183369	ucsc	+	Island
cg01565508	Loss	-0.106	0.399	0.504	PIK3R5	chr17	8869961	ucsc	+	S_Shore
cg01746241	Loss	-0.116	0.558	0.674	KIAA1161	chr9	34370836	ucsc	-	Island
cg02005600	Gain	0.155	0.888	0.733	HOXA5	chr7	27183687	ucsc	-	Island
cg02211646	Loss	-0.108	0.673	0.781	FOXP2	chr7	114055210	ucsc	+	OpenSea
cg02248486	Gain	0.126	0.890	0.764	HOXA5	chr7	27183197	ucsc	-	Island
cg02611934	Loss	-0.203	0.407	0.610	SLITRK5	chr13	88329407	ucsc	+	Island
cg02646423	Gain	0.110	0.810	0.700	HOXA5	chr7	27183795	ucsc	-	Island
cg02916332	Gain	0.150	0.825	0.675	HOXA5	chr7	27183591	ucsc	+	Island
cg03056494	Loss	-0.110	0.301	0.411		chr11	124595710	ucsc	+	OpenSea
cg03187073	Loss	-0.124	0.314	0.438	CDYL	chr6	4890080	ucsc	-	OpenSea
cg03308839	Loss	-0.114	0.429	0.543	MYH11, NDE1	chr16	15797298	ucsc	-	OpenSea
cg03351487	Loss	-0.118	0.560	0.678	STK39	chr2	169003821	ucsc	-	OpenSea
cg03529432	Gain	0.150	0.266	0.116	HOXA6	chr7	27187503	ucsc	-	Island
cg03906434	Loss	-0.148	0.138	0.286		chr7	27231820	ucsc	-	Island
cg04053108	Gain	0.204	0.437	0.233	VWF	chr12	6166029	ucsc	-	Island
cg04392082	Gain	0.139	0.383	0.245	SORBS2	chr4	186732926	ucsc	+	OpenSea
cg04863892	Gain	0.168	0.887	0.720	HOXA5	chr7	27183376	ucsc	-	Island
cg05076221	Gain	0.187	0.780	0.593	HOXA5	chr7	27182637	ucsc	+	Island
cg05492904	Loss	-0.116	0.484	0.600	CYP19A1	chr15	51604504	ucsc	-	OpenSea
cg05575639	Loss	-0.114	0.461	0.576	CHD7	chr8	61593696	ucsc	+	S_Shore
cg05757365	Loss	-0.170	0.448	0.618	SLITRK5	chr13	88328471	ucsc	+	N_Shore
cg05976283	Loss	-0.102	0.393	0.495		chr8	103140766	ucsc	-	S_Shelf
cg06218338	Loss	-0.126	0.146	0.272		chr7	27231895	ucsc	-	Island
cg06237983	Gain	0.128	0.471	0.343	HOXA6	chr7	27187269	ucsc	+	Island
cg06684088	Loss	-0.119	0.383	0.502		chr7	119132	ucsc	-	N_Shore
cg06906435	Loss	-0.154	0.388	0.542	C14orf177	chr14	99177778	ucsc	-	OpenSea
cg06911613	Loss	-0.127	0.533	0.660		chr16	85846185	ucsc	-	S_Shore
cg07053114	Loss	-0.126	0.372	0.498	PTPRE	chr10	129794994	ucsc	+	OpenSea
cg07278425	Loss	-0.190	0.413	0.603		chr7	27137922	ucsc	+	S_Shore
cg07318204	Loss	-0.190	0.541	0.732	HHIP	chr4	145566442	ucsc	-	Island
cg07333021	Loss	-0.106	0.546	0.652	C6orf134	chr6	30612331	ucsc	-	N_Shelf
cg07659054	Loss	-0.104	0.245	0.349	HOXA1	chr7	27134226	ucsc	-	Island
cg08319974	Gain	0.103	0.644	0.541		chr6	164506861	ucsc	+	OpenSea
cg08550523	Loss	-0.116	0.485	0.601		chr1	219047954	ucsc	+	OpenSea
cg08657654	Loss	-0.149	0.625	0.774		chr7	27138974	ucsc	+	S_Shelf
cg08941355	Loss	-0.157	0.521	0.678	HOXA1	chr7	27133107	ucsc	-	N_Shore
cg08959039	Loss	-0.138	0.346	0.484	COL4A2	chr13	111062266	ucsc	+	OpenSea
cg09203312	Loss	-0.108	0.571	0.679	GJB6	chr13	20805196	ucsc	+	N_Shore
cg09517766	Loss	-0.124	0.555	0.679		chr10	44894103	ucsc	-	OpenSea
cg09823859	Loss	-0.170	0.485	0.655	SLITRK5	chr13	88328294	ucsc	+	N_Shore
cg10228555	Loss	-0.111	0.352	0.463		chr16	3088480	ucsc	+	S_Shore
cg10827754	Loss	-0.142	0.506	0.647		chr2	101038262	ucsc	+	S_Shelf
cg11096515	Loss	-0.105	0.388	0.493	COL4A2	chr13	111062287	ucsc	+	OpenSea
cg11284147	Loss	-0.116	0.338	0.454		chr8	144437914	ucsc	+	N_Shelf
cg11321156	Gain	0.147	0.749	0.602	APP	chr21	27372397	ucsc	-	OpenSea
cg11341144	Loss	-0.128	0.494	0.621	TRA2B	chr3	185656290	ucsc	-	S_Shore
cg11377213	Loss	-0.101	0.315	0.416	FRMD4B	chr3	69370218	ucsc	+	OpenSea
cg11724970	Gain	0.143	0.912	0.769	HOXA5	chr7	27182494	ucsc	-	N_Shore
cg11758841	Loss	-0.112	0.613	0.725	PARVA	chr11	12530155	ucsc	+	OpenSea
cg11857140	Loss	-0.128	0.614	0.741	KIRREL3	chr11	126372533	ucsc	+	OpenSea
cg11939496	Loss	-0.105	0.512	0.617	CD244	chr1	160833560	ucsc	+	OpenSea
cg12051819	Loss	-0.105	0.316	0.421		chr1	114717639	ucsc	-	OpenSea
cg12115302	Loss	-0.130	0.364	0.494		chr12	30323676	ucsc	+	S_Shore
cg12122241	Loss	-0.116	0.450	0.566	SIRPA	chr20	1920407	ucsc	+	S_Shelf
cg12128839	Gain	0.193	0.860	0.667	HOXA5	chr7	27183437	ucsc	-	Island
cg12166476	Gain	0.110	0.520	0.409	LMO7	chr13	76334866	ucsc	+	OpenSea
cg12691572	Loss	-0.133	0.367	0.501	VTI1A	chr10	114574959	ucsc	+	OpenSea
cg12707346	Loss	-0.108	0.383	0.491		chr12	64960958	ucsc	-	OpenSea
cg12806882	Loss	-0.105	0.473	0.578	FMN2	chr1	240572392	ucsc	-	S_Shelf
cg12858593	Loss	-0.138	0.318	0.455	PIWIL2	chr8	22131899	ucsc	+	N_Shore
cg13404688	Loss	-0.103	0.292	0.394		chr10	89876324	ucsc	+	OpenSea
cg13932501	Loss	-0.112	0.503	0.616	AUH	chr9	94060853	ucsc	+	OpenSea
cg14014955	Gain	0.107	0.901	0.794	HOXA5	chr7	27183701	ucsc	+	Island
cg14044640	Gain	0.137	0.186	0.049	HOXA6	chr7	27187560	ucsc	+	Island
cg14179389	Gain	0.102	0.371	0.269	GFI1	chr1	92947962	ucsc	-	Island
cg14191466	Loss	-0.131	0.222	0.353	CDC42BPB	chr14	103440432	ucsc	+	OpenSea
cg14272075	Loss	-0.114	0.447	0.561	RNF126P1	chr17	55122538	ucsc	+	N_Shore
cg14312439	Loss	-0.118	0.362	0.481	CCR3	chr3	46283902	ucsc	+	OpenSea
cg14345154	Loss	-0.121	0.530	0.651	TTC8	chr14	89299302	ucsc	+	OpenSea
cg14422498	Loss	-0.101	0.283	0.384		chr9	100639424	ucsc	-	OpenSea
cg14746387	Loss	-0.104	0.332	0.436		chr5	172879300	ucsc	-	OpenSea
cg14853974	Gain	0.106	0.678	0.573	ARHGEF15	chr17	8218888	ucsc	-	OpenSea
cg14882265	Gain	0.133	0.891	0.758	HOXA5	chr7	27184375	ucsc	+	Island
cg15161959	Loss	-0.114	0.369	0.483		chr2	177020617	ucsc	-	N_Shelf
cg15297220	Gain	0.106	0.475	0.369		chr4	134589655	ucsc	+	OpenSea
cg15648345	Loss	-0.112	0.523	0.635	MKS1	chr17	56297360	ucsc	+	S_Shore
cg15699693	Loss	-0.114	0.567	0.681	MYOZ3	chr5	150054945	ucsc	-	S_Shelf
cg16058600	Loss	-0.116	0.405	0.521	NR4A2	chr2	157183014	ucsc	-	N_Shore
cg16278496	Gain	0.104	0.699	0.595	C14orf64	chr14	98444476	ucsc	+	OpenSea
cg16787483	Loss	-0.152	0.567	0.719	SLITRK5	chr13	88328252	ucsc	-	N_Shore
cg16804603	Loss	-0.128	0.457	0.585	FLJ22536	chr6	21856614	ucsc	-	OpenSea
cg16915863	Loss	-0.151	0.623	0.774	LOC400043	chr12	54523294	ucsc	+	S_Shelf
cg16923485	Gain	0.113	0.576	0.462	SLCO1A2	chr12	21476904	ucsc	+	OpenSea
cg17222829	Loss	-0.122	0.367	0.488	SHANK2	chr11	70433293	ucsc	+	OpenSea
cg17301248	Loss	-0.135	0.418	0.552	NAA25	chr12	112467203	ucsc	+	OpenSea
cg17376609	Loss	-0.150	0.613	0.763	SLITRK5	chr13	88328813	ucsc	+	N_Shore
cg17432857	Gain	0.132	0.806	0.674	HOXA5	chr7	27184439	ucsc	-	Island
cg17434008	Loss	-0.105	0.355	0.461		chr1	38974112	ucsc	-	OpenSea
cg17461600	Loss	-0.102	0.595	0.697	DAB1	chr1	57983369	ucsc	-	OpenSea
cg17485838	Loss	-0.178	0.359	0.538		chr7	27138713	ucsc	-	S_Shore
cg17569124	Gain	0.211	0.872	0.661	HOXA5	chr7	27183644	ucsc	-	Island
cg17615629	Gain	0.114	0.776	0.662	HLA-E	chr6	30459867	ucsc	+	S_Shore
cg17654050	Loss	-0.111	0.449	0.560	NR4A2	chr2	157184978	ucsc	+	N_Shore
cg17785202	Loss	-0.127	0.494	0.621		chr1	14870226	ucsc	+	OpenSea
cg17791799	Loss	-0.131	0.503	0.634	PROM1	chr4	16036123	ucsc	+	OpenSea
cg17904575	Gain	0.106	0.687	0.582	PPP2R5C	chr14	102290371	ucsc	-	OpenSea
cg17994139	Gain	0.121	0.165	0.044	HOXA6	chr7	27187556	ucsc	+	Island
cg18141622	Loss	-0.108	0.369	0.477		chr2	238525525	ucsc	-	OpenSea
cg18274664	Gain	0.152	0.752	0.600	APP	chr21	27372462	ucsc	-	OpenSea
cg18477569	Loss	-0.127	0.374	0.501	BACH2	chr6	90951134	ucsc	+	OpenSea
cg18546840	Loss	-0.109	0.690	0.799	FOXP2	chr7	114055123	ucsc	+	OpenSea
cg18805066	Loss	-0.106	0.168	0.274	HOXA1	chr7	27134260	ucsc	-	Island
cg18871253	Loss	-0.108	0.634	0.741	FOXP2	chr7	114055138	ucsc	-	OpenSea
cg19759481	Gain	0.170	0.896	0.726	HOXA5	chr7	27183402	ucsc	-	Island
cg19816811	Gain	0.104	0.634	0.531	HOXA6	chr7	27188364	ucsc	+	N_Shore
cg19981409	Loss	-0.119	0.309	0.428	NOX4	chr11	89225043	ucsc	-	S_Shore
cg20071624	Loss	-0.126	0.269	0.396	WIPI2	chr7	5258358	ucsc	-	OpenSea
cg20474425	Gain	0.108	0.397	0.290		chr12	54746068	ucsc	-	OpenSea
cg20517050	Gain	0.132	0.915	0.783	HOXA5	chr7	27183807	ucsc	-	Island
cg20706134	Loss	-0.107	0.627	0.734	PCDH20	chr13	61990025	ucsc	+	OpenSea
cg20811236	Loss	-0.104	0.425	0.529		chr18	46501400	ucsc	+	N_Shore
cg21090457	Loss	-0.159	0.462	0.621	ROBO2	chr3	77573709	ucsc	+	OpenSea
cg21758126	Loss	-0.107	0.446	0.553	NR4A2	chr2	157183292	ucsc	-	N_Shore
cg22011526	Loss	-0.110	0.678	0.788	C6orf89	chr6	36857605	ucsc	+	S_Shelf
cg22076474	Loss	-0.109	0.383	0.491	BACH1	chr21	30677173	ucsc	-	OpenSea
cg22111527	Loss	-0.121	0.375	0.496		chr11	69260137	ucsc	-	S_Shore
cg22154659	Loss	-0.118	0.416	0.534	HOXA1	chr7	27134370	ucsc	-	N_Shore
cg22222281	Loss	-0.104	0.419	0.524	CD9	chr12	6308759	ucsc	-	N_Shore
cg22321572	Loss	-0.119	0.210	0.329	C6orf124	chr6	168225924	ucsc	-	N_Shore
cg22469274	Gain	0.106	0.155	0.049	HOXA6	chr7	27187553	ucsc	+	Island
cg22679316	Loss	-0.108	0.347	0.455	HOXC9	chr12	54396991	ucsc	-	N_Shelf
cg23054181	Loss	-0.122	0.453	0.575	FAM169B	chr15	99048945	ucsc	+	OpenSea
cg23111488	Loss	-0.147	0.632	0.779		chr5	144538351	ucsc	-	OpenSea
cg23129930	Gain	0.135	0.751	0.616	HOXA6	chr7	27186993	ucsc	+	Island
cg23333146	Loss	-0.107	0.549	0.656	EIF4E3	chr3	71731211	ucsc	+	OpenSea
cg23590660	Loss	-0.108	0.332	0.440	FOXJ2	chr12	8205603	ucsc	-	OpenSea
cg23679819	Gain	0.105	0.609	0.504	RNMT	chr18	13730666	ucsc	-	S_Shelf
cg23720384	Loss	-0.105	0.442	0.547		chr21	23747056	ucsc	-	OpenSea
cg23865240	Loss	-0.174	0.320	0.494	HOXA1	chr7	27134109	ucsc	+	Island
cg23998119	Gain	0.108	0.262	0.154	ZDHHC22	chr14	77600218	ucsc	-	OpenSea
cg24168308	Gain	0.124	0.744	0.621	APP	chr21	27372388	ucsc	-	OpenSea
cg24492202	Loss	-0.127	0.500	0.627	SH3BP2	chr4	2802613	ucsc	-	OpenSea
cg24549912	Loss	-0.102	0.234	0.336		chr5	50692281	ucsc	+	N_Shelf
cg24595580	Loss	-0.108	0.402	0.510	FLJ42289	chr15	100890997	ucsc	-	S_Shore
cg24626752	Loss	-0.171	0.510	0.681	SLITRK5	chr13	88328274	ucsc	+	N_Shore
cg24786986	Loss	-0.110	0.642	0.753	FOXP2	chr7	114055133	ucsc	+	OpenSea
cg25037165	Loss	-0.121	0.767	0.889	TEAD1	chr11	12824284	ucsc	-	OpenSea
cg25140190	Loss	-0.123	0.428	0.550	C18orf1	chr18	13641530	ucsc	-	N_Shore
cg25285743	Gain	0.104	0.704	0.600	LMO3	chr12	16701533	ucsc	+	OpenSea
cg25307665	Gain	0.216	0.910	0.694	HOXA5	chr7	27183695	ucsc	-	Island
cg25356504	Loss	-0.115	0.343	0.458	SARM1	chr17	26707476	ucsc	+	N_Shore
cg25556579	Loss	-0.135	0.395	0.531	TBX5	chr12	114829194	ucsc	+	OpenSea
cg25598685	Loss	-0.135	0.609	0.744		chr11	42617544	ucsc	+	OpenSea
cg25607216	Loss	-0.105	0.690	0.795		chr11	126976229	ucsc	-	OpenSea
cg25866143	Gain	0.112	0.890	0.778	HOXA5	chr7	27183262	ucsc	+	Island
cg25942940	Loss	-0.111	0.686	0.797		chr1	8270646	ucsc	-	N_Shore
cg26023912	Gain	0.125	0.841	0.716	HOXA5	chr7	27184369	ucsc	+	Island
cg26033526	Gain	0.108	0.638	0.530	TAP1	chr6	32819858	ucsc	+	N_Shore
cg26136772	Loss	-0.117	0.511	0.629	FOXK1	chr7	4754682	ucsc	-	N_Shelf
cg26168643	Loss	-0.196	0.424	0.620	SLITRK5	chr13	88328010	ucsc	-	N_Shore
cg26264232	Loss	-0.138	0.129	0.267		chr7	27138752	ucsc	-	S_Shelf
cg26673377	Loss	-0.108	0.601	0.710		chr6	123182996	ucsc	+	OpenSea
cg26768584	Gain	0.113	0.697	0.584	SATB1	chr3	18480243	ucsc	-	OpenSea
cg27306802	Loss	-0.118	0.302	0.420	MEGF6	chr1	3510561	ucsc	+	N_Shore
cg27405731	Loss	-0.121	0.424	0.545	CUX1	chr7	101571203	ucsc	+	OpenSea
cg27606341	Loss	-0.114	0.388	0.502	FYB	chr5	39219633	ucsc	-	OpenSea