Download Table
Illumina array probe ID |
DNAm gain or loss |
Mean DNAm change (Δβ) |
Mean case DNAm |
Mean control DNAm |
Gene symbol |
Chromosome |
Genomic coordinate hg19 |
UCSC Genome Browser |
Strand |
Relation to CpG island |
cg00108944 |
Gain |
0.131 |
0.297 |
0.166 |
GLIPR1L2 |
chr12 |
75784856 |
ucsc |
- |
Island |
cg00137234 |
Loss |
-0.131 |
0.519 |
0.650 |
RBM46 |
chr4 |
155703139 |
ucsc |
- |
Island |
cg00237268 |
Loss |
-0.102 |
0.624 |
0.726 |
SORCS2 |
chr4 |
7287616 |
ucsc |
- |
OpenSea |
cg00404187 |
Loss |
-0.099 |
0.495 |
0.593 |
|
chr7 |
140135611 |
ucsc |
+ |
Island |
cg00424169 |
Loss |
-0.103 |
0.580 |
0.683 |
C13orf26 |
chr13 |
31506837 |
ucsc |
+ |
OpenSea |
cg00524967 |
Loss |
-0.092 |
0.642 |
0.734 |
RFC3 |
chr13 |
34391826 |
ucsc |
+ |
N_Shore |
cg00639615 |
Loss |
-0.112 |
0.400 |
0.512 |
FANCI |
chr15 |
89786496 |
ucsc |
+ |
N_Shore |
cg01447828 |
Gain |
0.079 |
0.709 |
0.630 |
PRX |
chr19 |
40919466 |
ucsc |
- |
OpenSea |
cg01601573 |
Loss |
-0.115 |
0.398 |
0.513 |
GAB1 |
chr4 |
144256836 |
ucsc |
- |
N_Shore |
cg01781662 |
Loss |
-0.097 |
0.363 |
0.460 |
METTL11A |
chr9 |
132387805 |
ucsc |
+ |
N_Shore |
cg01786973 |
Loss |
-0.115 |
0.550 |
0.665 |
NR5A1 |
chr9 |
127249749 |
ucsc |
+ |
Island |
cg01901788 |
Loss |
-0.094 |
0.440 |
0.534 |
MAP1LC3A |
chr20 |
33145849 |
ucsc |
- |
N_Shore |
cg01927921 |
Loss |
-0.115 |
0.613 |
0.728 |
|
chr5 |
3787907 |
ucsc |
- |
OpenSea |
cg02071292 |
Gain |
0.188 |
0.300 |
0.112 |
GLIPR1L2 |
chr12 |
75785098 |
ucsc |
- |
Island |
cg02327189 |
Loss |
-0.088 |
0.423 |
0.511 |
|
chr7 |
57830005 |
ucsc |
- |
OpenSea |
cg02415057 |
Gain |
0.178 |
0.316 |
0.138 |
GLIPR1L2 |
chr12 |
75784885 |
ucsc |
- |
Island |
cg02596089 |
Loss |
-0.085 |
0.576 |
0.661 |
CCDC9 |
chr19 |
47759400 |
ucsc |
+ |
N_Shore |
cg02707799 |
Gain |
0.105 |
0.582 |
0.477 |
MYST3 |
chr8 |
41814854 |
ucsc |
+ |
OpenSea |
cg02763002 |
Loss |
-0.080 |
0.685 |
0.765 |
GLT1D1 |
chr12 |
129444671 |
ucsc |
+ |
OpenSea |
cg02991085 |
Loss |
-0.156 |
0.118 |
0.274 |
NCRNA00028 |
chr20 |
30073537 |
ucsc |
+ |
S_Shore |
cg03144232 |
Loss |
-0.090 |
0.203 |
0.294 |
STX1B |
chr16 |
31022352 |
ucsc |
- |
OpenSea |
cg03168497 |
Loss |
-0.214 |
0.121 |
0.335 |
MYCBPAP |
chr17 |
48586148 |
ucsc |
- |
Island |
cg03335125 |
Loss |
-0.116 |
0.814 |
0.930 |
CCDC17 |
chr1 |
46088542 |
ucsc |
- |
Island |
cg03606898 |
Loss |
-0.087 |
0.850 |
0.936 |
|
chr19 |
2926883 |
ucsc |
- |
Island |
cg03642635 |
Gain |
0.129 |
0.392 |
0.263 |
IGSF9B |
chr11 |
133788234 |
ucsc |
- |
Island |
cg03755566 |
Loss |
-0.104 |
0.547 |
0.652 |
ACTA2 |
chr10 |
90695563 |
ucsc |
+ |
OpenSea |
cg03995300 |
Loss |
-0.132 |
0.218 |
0.350 |
ZNF232 |
chr17 |
5019989 |
ucsc |
+ |
S_Shore |
cg04202002 |
Loss |
-0.084 |
0.686 |
0.771 |
|
chr2 |
127643361 |
ucsc |
- |
N_Shore |
cg04444104 |
Gain |
0.122 |
0.622 |
0.500 |
|
chr16 |
89059436 |
ucsc |
+ |
OpenSea |
cg04471507 |
Loss |
-0.081 |
0.268 |
0.350 |
STMN1 |
chr1 |
26233376 |
ucsc |
+ |
Island |
cg04844038 |
Gain |
0.115 |
0.621 |
0.506 |
SORCS1 |
chr10 |
108921321 |
ucsc |
- |
N_Shelf |
cg05295388 |
Loss |
-0.108 |
0.495 |
0.603 |
|
chr2 |
118594305 |
ucsc |
- |
S_Shore |
cg05630111 |
Loss |
-0.147 |
0.476 |
0.622 |
LASS2 |
chr1 |
150948031 |
ucsc |
- |
S_Shore |
cg06067394 |
Gain |
0.102 |
0.762 |
0.660 |
IGSF9B |
chr11 |
133789110 |
ucsc |
+ |
Island |
cg06178322 |
Loss |
-0.098 |
0.096 |
0.194 |
PLEKHM2 |
chr1 |
16010346 |
ucsc |
- |
N_Shore |
cg06324373 |
Gain |
0.182 |
0.532 |
0.350 |
CRTAC1 |
chr10 |
99734806 |
ucsc |
- |
OpenSea |
cg06377543 |
Loss |
-0.091 |
0.696 |
0.787 |
PSMA8 |
chr18 |
23713657 |
ucsc |
+ |
N_Shore |
cg06524264 |
Gain |
0.151 |
0.884 |
0.733 |
C20orf96 |
chr20 |
259926 |
ucsc |
- |
Island |
cg06593603 |
Gain |
0.131 |
0.589 |
0.458 |
SLC6A19 |
chr5 |
1218042 |
ucsc |
+ |
N_Shore |
cg06687305 |
Loss |
-0.106 |
0.699 |
0.805 |
CCDC17 |
chr1 |
46088487 |
ucsc |
- |
Island |
cg07311024 |
Gain |
0.149 |
0.320 |
0.171 |
GLIPR1L2 |
chr12 |
75785090 |
ucsc |
- |
Island |
cg07670516 |
Loss |
-0.128 |
0.529 |
0.657 |
ZNF232 |
chr17 |
5019841 |
ucsc |
- |
Island |
cg07788167 |
Loss |
-0.094 |
0.553 |
0.647 |
|
chr7 |
57484272 |
ucsc |
+ |
Island |
cg08111158 |
Loss |
-0.106 |
0.286 |
0.391 |
|
chr1 |
227746191 |
ucsc |
+ |
Island |
cg08137948 |
Loss |
-0.099 |
0.168 |
0.267 |
LGALS8 |
chr1 |
236686805 |
ucsc |
- |
N_Shore |
cg08316083 |
Gain |
0.141 |
0.410 |
0.269 |
ATP8B3 |
chr19 |
1796208 |
ucsc |
- |
Island |
cg08620329 |
Loss |
-0.209 |
0.558 |
0.767 |
|
chr8 |
67454546 |
ucsc |
+ |
Island |
cg08801479 |
Loss |
-0.097 |
0.802 |
0.899 |
NOTCH4 |
chr6 |
32165201 |
ucsc |
- |
S_Shore |
cg08942800 |
Loss |
-0.111 |
0.690 |
0.800 |
CRISP2 |
chr6 |
49681310 |
ucsc |
+ |
OpenSea |
cg09071762 |
Loss |
-0.092 |
0.667 |
0.759 |
DPPA5 |
chr6 |
74064149 |
ucsc |
+ |
Island |
cg09334514 |
Loss |
-0.095 |
0.491 |
0.586 |
LGALS8 |
chr1 |
236686671 |
ucsc |
+ |
N_Shore |
cg09491536 |
Loss |
-0.084 |
0.573 |
0.657 |
|
chr5 |
3787915 |
ucsc |
+ |
OpenSea |
cg09577391 |
Loss |
-0.138 |
0.470 |
0.609 |
ZNF606 |
chr19 |
58515047 |
ucsc |
- |
S_Shore |
cg09615056 |
Gain |
0.116 |
0.437 |
0.321 |
C16orf91 |
chr16 |
1478718 |
ucsc |
+ |
Island |
cg10313047 |
Loss |
-0.114 |
0.426 |
0.541 |
DNAH1 |
chr3 |
52351356 |
ucsc |
- |
OpenSea |
cg10831725 |
Loss |
-0.117 |
0.727 |
0.844 |
|
chr19 |
21666553 |
ucsc |
- |
Island |
cg10923408 |
Loss |
-0.119 |
0.465 |
0.584 |
C13orf26 |
chr13 |
31506710 |
ucsc |
+ |
OpenSea |
cg11108890 |
Gain |
0.096 |
0.228 |
0.131 |
VAMP5 |
chr2 |
85811472 |
ucsc |
- |
Island |
cg11296498 |
Gain |
0.081 |
0.199 |
0.118 |
COL9A3 |
chr20 |
61447036 |
ucsc |
+ |
N_Shore |
cg11491537 |
Loss |
-0.109 |
0.656 |
0.765 |
C2orf27A |
chr2 |
132511720 |
ucsc |
+ |
OpenSea |
cg12109823 |
Loss |
-0.194 |
0.543 |
0.737 |
|
chr8 |
67454595 |
ucsc |
+ |
Island |
cg12134633 |
Loss |
-0.142 |
0.419 |
0.561 |
SCG5 |
chr15 |
32934005 |
ucsc |
- |
OpenSea |
cg12154538 |
Gain |
0.151 |
0.325 |
0.174 |
NCOR2 |
chr12 |
124873674 |
ucsc |
- |
Island |
cg12351126 |
Gain |
0.175 |
0.260 |
0.086 |
GLIPR1L2 |
chr12 |
75784865 |
ucsc |
- |
Island |
cg12535715 |
Loss |
-0.093 |
0.418 |
0.511 |
HTRA4 |
chr8 |
38831694 |
ucsc |
- |
Island |
cg13073141 |
Loss |
-0.099 |
0.605 |
0.704 |
LASS2 |
chr1 |
150948025 |
ucsc |
- |
S_Shore |
cg13112404 |
Loss |
-0.094 |
0.750 |
0.844 |
C1orf14 |
chr1 |
182921689 |
ucsc |
- |
N_Shore |
cg13159946 |
Loss |
-0.098 |
0.188 |
0.286 |
NCRNA00028 |
chr20 |
30073521 |
ucsc |
+ |
S_Shore |
cg13349472 |
Loss |
-0.084 |
0.508 |
0.591 |
|
chr2 |
25427452 |
ucsc |
- |
Island |
cg13474370 |
Loss |
-0.106 |
0.452 |
0.559 |
RBPMS2 |
chr15 |
65068886 |
ucsc |
- |
S_Shore |
cg13614409 |
Loss |
-0.219 |
0.385 |
0.604 |
C13orf26 |
chr13 |
31506752 |
ucsc |
+ |
OpenSea |
cg14220678 |
Loss |
-0.146 |
0.741 |
0.887 |
CCDC17 |
chr1 |
46089024 |
ucsc |
+ |
Island |
cg14354168 |
Loss |
-0.108 |
0.540 |
0.648 |
|
chr6 |
1619135 |
ucsc |
- |
Island |
cg14435498 |
Gain |
0.085 |
0.506 |
0.421 |
|
chr10 |
133251575 |
ucsc |
- |
OpenSea |
cg14880348 |
Gain |
0.126 |
0.706 |
0.580 |
COL9A3 |
chr20 |
61447174 |
ucsc |
+ |
N_Shore |
cg15457981 |
Gain |
0.110 |
0.601 |
0.491 |
COL9A3 |
chr20 |
61447276 |
ucsc |
+ |
N_Shore |
cg15537254 |
Loss |
-0.084 |
0.307 |
0.391 |
NCRNA00028 |
chr20 |
30073400 |
ucsc |
- |
S_Shore |
cg16290689 |
Loss |
-0.116 |
0.485 |
0.602 |
C13orf26 |
chr13 |
31506686 |
ucsc |
- |
OpenSea |
cg16419724 |
Loss |
-0.104 |
0.558 |
0.662 |
MARVELD2 |
chr5 |
68711519 |
ucsc |
+ |
Island |
cg16519192 |
Gain |
0.118 |
0.421 |
0.303 |
|
chr12 |
116037126 |
ucsc |
+ |
OpenSea |
cg16719560 |
Gain |
0.097 |
0.223 |
0.126 |
VAMP5 |
chr2 |
85811421 |
ucsc |
+ |
Island |
cg16865965 |
Gain |
0.182 |
0.342 |
0.159 |
VAMP5 |
chr2 |
85811663 |
ucsc |
- |
Island |
cg17050806 |
Gain |
0.211 |
0.393 |
0.182 |
GLIPR1L2 |
chr12 |
75785295 |
ucsc |
+ |
S_Shore |
cg17270081 |
Gain |
0.101 |
0.736 |
0.635 |
LHX3 |
chr9 |
139092975 |
ucsc |
- |
Island |
cg17519938 |
Loss |
-0.144 |
0.502 |
0.646 |
LRRC47 |
chr1 |
3713581 |
ucsc |
- |
S_Shore |
cg17780447 |
Loss |
-0.100 |
0.553 |
0.653 |
|
chr19 |
22700870 |
ucsc |
- |
Island |
cg18174881 |
Loss |
-0.128 |
0.638 |
0.765 |
C14orf106 |
chr14 |
45723353 |
ucsc |
+ |
S_Shore |
cg18793215 |
Loss |
-0.082 |
0.361 |
0.442 |
CRABP2 |
chr1 |
156674686 |
ucsc |
- |
N_Shore |
cg18842474 |
Gain |
0.227 |
0.371 |
0.144 |
SLC22A23 |
chr6 |
3356384 |
ucsc |
+ |
OpenSea |
cg19873923 |
Gain |
0.120 |
0.441 |
0.321 |
TC2N |
chr14 |
92301923 |
ucsc |
- |
N_Shore |
cg19961173 |
Gain |
0.098 |
0.372 |
0.274 |
IGSF9B |
chr11 |
133788902 |
ucsc |
+ |
Island |
cg20454518 |
Gain |
0.094 |
0.425 |
0.331 |
FBRSL1 |
chr12 |
133135463 |
ucsc |
+ |
Island |
cg20462561 |
Loss |
-0.151 |
0.586 |
0.737 |
|
chr1 |
228890821 |
ucsc |
- |
Island |
cg21248196 |
Loss |
-0.104 |
0.699 |
0.804 |
PSMA8 |
chr18 |
23714085 |
ucsc |
- |
S_Shore |
cg21272279 |
Gain |
0.189 |
0.392 |
0.203 |
GLIPR1L2 |
chr12 |
75785232 |
ucsc |
+ |
Island |
cg21846177 |
Loss |
-0.089 |
0.062 |
0.150 |
NCRNA00028 |
chr20 |
30073576 |
ucsc |
+ |
S_Shore |
cg21867110 |
Loss |
-0.111 |
0.492 |
0.603 |
|
chr19 |
22700398 |
ucsc |
- |
Island |
cg22012583 |
Loss |
-0.091 |
0.446 |
0.537 |
LASS2 |
chr1 |
150947949 |
ucsc |
+ |
Island |
cg23107878 |
Loss |
-0.173 |
0.281 |
0.453 |
|
chr1 |
152161397 |
ucsc |
+ |
Island |
cg23504719 |
Gain |
0.123 |
0.603 |
0.480 |
CRTAC1 |
chr10 |
99735011 |
ucsc |
- |
OpenSea |
cg23588049 |
Gain |
0.138 |
0.319 |
0.182 |
GLIPR1L2 |
chr12 |
75784863 |
ucsc |
- |
Island |
cg23926439 |
Loss |
-0.124 |
0.461 |
0.586 |
|
chr1 |
228890885 |
ucsc |
- |
Island |
cg24675557 |
Loss |
-0.099 |
0.656 |
0.755 |
BLCAP, NNAT |
chr20 |
36149081 |
ucsc |
+ |
Island |
cg24975642 |
Gain |
0.119 |
0.355 |
0.237 |
NCOR2 |
chr12 |
124873347 |
ucsc |
+ |
Island |
cg25006249 |
Gain |
0.157 |
0.901 |
0.745 |
C20orf96 |
chr20 |
259899 |
ucsc |
- |
Island |
cg25283121 |
Gain |
0.108 |
0.493 |
0.384 |
GALNT9 |
chr12 |
132904540 |
ucsc |
+ |
N_Shore |
cg25323057 |
Loss |
-0.110 |
0.222 |
0.332 |
AGAP11, C10orf116 |
chr10 |
88730481 |
ucsc |
+ |
N_Shore |
cg25502144 |
Loss |
-0.120 |
0.084 |
0.204 |
NCRNA00028 |
chr20 |
30073546 |
ucsc |
+ |
S_Shore |
cg25651505 |
Gain |
0.087 |
0.308 |
0.221 |
VAMP5 |
chr2 |
85812023 |
ucsc |
+ |
S_Shore |
cg25683185 |
Loss |
-0.096 |
0.640 |
0.735 |
ACRBP |
chr12 |
6756089 |
ucsc |
- |
Island |
cg25716013 |
Loss |
-0.153 |
0.517 |
0.669 |
COX7A2 |
chr6 |
75954054 |
ucsc |
- |
OpenSea |
cg25970491 |
Loss |
-0.114 |
0.301 |
0.415 |
CLTCL1 |
chr22 |
19279922 |
ucsc |
+ |
S_Shore |
cg25983544 |
Loss |
-0.087 |
0.698 |
0.785 |
PSMA8 |
chr18 |
23713627 |
ucsc |
- |
N_Shore |
cg26349358 |
Loss |
-0.085 |
0.519 |
0.604 |
|
chr2 |
468989 |
ucsc |
+ |
S_Shore |
cg26450860 |
Loss |
-0.093 |
0.175 |
0.268 |
|
chr12 |
125413164 |
ucsc |
+ |
Island |